When I reload an auto-save game, it always seems to save to the beginning of the following turn, which is wrong.
Let me explain.
For example, I change my auto-save to occur every turn. If I get attacked between turns, and I lose, I can re-load the last auto-save and it is now the beginning of the next turn. My unit is still alive, and the enemy hasn't moved. Yet, its my turn to move again. Shouldn't reloading the auto-save take me back to the end of the previous turn? Its almost like it has saved the previous units locations and such, but then ignored anything that's happened in between turns.
If it makes any difference, I always untick the auto-complete turns in the options screen. I like to hit the end turn button myself.
[Edit] This was also happening in Fallen Enchantress, just never got around to reporting it.