I'm assuming this is because there were unique Empire buildings my Kingdom couldn't use, and they were destroyed upon conquering the city. In 3D mode I can see there are empty slots where the black squares are on the cloth map.
I was just getting that last night. Thought it was a problem with the fog of war at first and didn't post it.
Definately looks like a bug now that I see your posted image...
Sometimes the cloth map is also glitched with lines or other stuff that shouldn't be there. I'll post a screenshot when I see it happening again.
Here it is. This glitch is visible at any cloth map zoom level. The 3D mode is not affected.
Here another shot of the problem:
For me, they're all the same building (or rather, empty space): http://img52.imageshack.us/img52/2387/game6kingdombugblacksqu.jpg
That's exactly what's going on on my end too. Empty tiles. I suppose it's unique buildings like Sacrifice Altar and such disappearing upon conquering the city. On another note, we need more unique buildings!
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