I was playing a custom race. Started a new game on a tiny map. Decided to soak and see what happens. The AI for my custom race built a shipyard for one of their colonies. The colony was ONE space away from the left edge of the map. The AI auto places the shipyard TWO spaces left of the planet. I stopped soak, I couldn't click on the shipyard from the galaxy map. Shipyard shows up in the shipyard list however. I can click the shipyard in the list, and click manage to go inside the shipyard. The AI somehow still manages to build something inside the shipyard.
Note: I have not submitted a ticket.