Remember, the problem is intermittent. It may happen once every 2 days or more. Sometimes 2x in one day or even at first bootup. But I could not do my job if I ran a clean-boot mode every day until (or if) it happens again. That's a 'test' for a problem that is continual. This one is not.
Clean boot? Yes, I'm sure that if I eliminated all other open programs and there are no services operating other than Stardock's your software would work 100% of the time. But...that's not the real world, is it?
Clean boot? I have 160 installed programs according to Sumo...and everything is cooperating with everything else. Except for Start11 (now and then, as I stated) in its last few iterations.
I have priorities in my work-a-day world and running a in clean boot mode until this happens again is beyond what I can provided.