I hevent this bug yet, but listen.
First, you are blue and red the enemy, this options is "use team colors" on "user interface", that change to only 2 colors, blue= friend, red= enemy. Go and disable it
Second, Go to menu "user interface" and active again the auto pin options.
yesterday i load the game, and the icons go off, cinmatic mode OFF, put ON, OFF nothing changed, so, for any reason "user interface" change and "show icons" are disable, i active it, and play normal.
Is a bug, one user post over this bug.
EDIT: HERE same problem ----->https://forums.sinsofasolarempire.com/428183
Try with reset button
Sorry for my english