I'm not having much success reproducing the vivid trade routes found in my original posts. However, it does seem easy to reproduce a nearly invisible trade route.
I started a new game with the .71.1 opt-in beta, and after establishing my first trade route it looked like this:

After saving and reloading, the trade route is nearly invisible:

It's black, not blue like it was originally, so it can't be seen on the black space background, I had to highlight it a little further out where it could be (poorly) seen against the gray background.
I'll see if I can update the ticket with my latest saved game.