I experienced this in a ZYW, although ony one time. I was colonizing the 3rd planet, building a starport and buying a ship; but subsequently I couldn't follow my research-order to the last tech.
So I reloaded to colonize but built a lab instead, just to get a colonization-event which yielded a 100% research-bonus-tile, which was not there game the before. Was positively surprised about that. The game stuck well into my mind because, actually in the same turn/game, my FlagShip found a 1000bc anomaly, which on reload was someting different. And that I didn't knew previously also not, that asteroids et al hold varying bonuses.
I reloaded this turn for quite some, when I got the PQ-event again the 100% tile was again there.
Nevertheless, the possibility is there that it was only a glitch. I remember Arunodayt once had a MV-game which started out on a PQ19 planet. (Why do such things never happen to me?) Such things can happen actually, randomly, who knows when a small info on harddrive gets corrupted?
This is not to be confused with ctrl-n which does regen the galaxy and definitely can change the number and type of bonus tiles on your homeworld, and every other planet as well. However IIRC ctrl-n otherwise keeps the galaxy the same as to number of systems and planets and I think even number of total resources although I'm pretty sure the numbers of each type of resource can change
*Very* interesting. Can this be confirmed? I actually asumed otherwise - because if you do Control-N you'll have to have a connection established to the MV.
Although that doesn't prove anything - you could be very right after all.