I'm having this problem as well. I purchased the game yesterday, and immediately upgraded to v1.1, and eagerly started the campaign, only to be greeted by Unarmed Drengin Defenders in orbit around their planets. Not only that, but once I started routinely destroying these ships with my lil' peashooter laser skiffs, they churn out MORE unarmed defenders to "protect" their planet.
Worse yet, the AI seems to be doing this in sandbox mode too, making the game... Well, boring. I didn't care so much that this game didn't have multiplayer because I heard that the AI was so challenging. But come ON... Unarmed ships on NORMAL mode? That ain't normal, that's just laughable.
Close eyes = Beat Game.